STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshBMSHA pilin protein MshB. (205 aa)    
Predicted Functional Partners:
mshJ
MSHA biogenesis protein MshJ.
 
   
 0.914
mshIa
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.914
mshL
MSHA biogenesis protein MshL.
 
    0.913
mshE
MSHA biogenesis protein MshE.
 
  0.904
mshN
Tetratricopeptide repeat-containing protein.
 
     0.901
mshG
MSHA biogenesis protein MshG.
 
    0.896
mshM
MSHA biogenesis protein MshM.
 
     0.843
mshO
MSHA biogenesis protein MshO.
 
   
 0.819
mshD
MSHA pilin protein MshD.
 
   
 0.811
mshQ
MSHA biogenesis protein MshQ.
 
     0.782
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.