STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshLMSHA biogenesis protein MshL. (565 aa)    
Predicted Functional Partners:
mshN
Tetratricopeptide repeat-containing protein.
 
 
 0.960
mshIa
Tfp pilus assembly protein, ATPase PilM.
 
  
 0.954
mshJ
MSHA biogenesis protein MshJ.
 
  
 0.953
gspC
Type II secretion system protein C (GspC).
 
 
 0.940
mshM
MSHA biogenesis protein MshM.
 
    0.938
mshG
MSHA biogenesis protein MshG.
 
  
 0.937
mshE
MSHA biogenesis protein MshE.
 
  
 0.928
mshB
MSHA pilin protein MshB.
 
    0.913
mshA
MSH system major pilin protein MshA.
 
  
 0.880
mshIb
Fimbrial assembly protein (PilN).
     
 0.812
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.