rpmH protein (Idiomarinaceae bacterium HL53)

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Score

rpmH

LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)

Predicted Functional Partners:

rpmB

0.995

rpsT

0.994

rplU

0.994

rplM

0.991

rpsP

0.991

rpmF

0.991

rpsU

0.990

rpsN

0.989

rpmI

0.989

rpsL

0.988

Your Current Organism:

Idiomarinaceae bacterium HL53

NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Ga0003345_0342	Ga0003345_0244	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplM	rpmB	Ga0003345_0342	Ga0003345_0543	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rplM	rpmF	Ga0003345_0342	Ga0003345_1921	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.994
rplM	rpmH	Ga0003345_0342	Ga0003345_0742	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.991
rplM	rpmI	Ga0003345_0342	Ga0003345_1868	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.995
rplM	rpsL	Ga0003345_0342	Ga0003345_0431	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.996
rplM	rpsN	Ga0003345_0342	Ga0003345_1513	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.996
rplM	rpsP	Ga0003345_0342	Ga0003345_1622	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.996
rplM	rpsT	Ga0003345_0342	Ga0003345_0113	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.995
rplM	rpsU	Ga0003345_0342	Ga0003345_1237	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.994
rplU	rplM	Ga0003345_0244	Ga0003345_0342	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplU	rpmB	Ga0003345_0244	Ga0003345_0543	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rplU	rpmF	Ga0003345_0244	Ga0003345_1921	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.995
rplU	rpmH	Ga0003345_0244	Ga0003345_0742	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.994
rplU	rpmI	Ga0003345_0244	Ga0003345_1868	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.994
rplU	rpsL	Ga0003345_0244	Ga0003345_0431	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.994
rplU	rpsN	Ga0003345_0244	Ga0003345_1513	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.994
rplU	rpsP	Ga0003345_0244	Ga0003345_1622	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.996
rplU	rpsT	Ga0003345_0244	Ga0003345_0113	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.996
rplU	rpsU	Ga0003345_0244	Ga0003345_1237	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.994