STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccoHHypothetical protein. (176 aa)    
Predicted Functional Partners:
ccoS
Cytochrome oxidase maturation protein, cbb3-type.
 
     0.935
CUS48982.1
Hypothetical protein.
 
     0.912
ccoP
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.899
ccoI
Cu2+-exporting ATPase.
 
    0.895
ccoO
Cytochrome c oxidase cbb3-type subunit 2.
 
    0.787
ccoG
Cytochrome c oxidase accessory protein FixG.
 
    0.754
ccoN
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.734
CUS48981.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
       0.685
CUS47771.1
Protein of unknown function (DUF2489).
  
     0.657
CUS48522.1
Uncharacterized membrane protein YckC, RDD family.
  
     0.625
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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