STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS49294.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
rlmM
23S rRNA (cytidine2498-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.805
gcvA
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
       0.783
CUS49296.1
Hypothetical protein.
       0.773
CUS47108.1
Hypothetical protein.
    
 0.648
CUS47118.1
Hypothetical protein.
    
 0.648
CUS48353.1
Sulfotransferase family protein.
    
 0.648
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.536
ppx-gppA
Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Belongs to the GppA/Ppx family.
       0.536
CUS49299.1
Peptidase MA superfamily.
       0.536
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.