STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002578Putative histone deacetylase complex subunit cti6. (575 aa)    
Predicted Functional Partners:
J056_001842
Uncharacterized protein.
    
 
 0.755
J056_000231
Paired amphipathic helix protein pst1.
    
 0.753
J056_002945
Reticulocyte-binding protein 2-like protein a.
    
 
 0.748
J056_000219
Histone-lysine N-methyltransferase, H3 lysine-4 specific.
    
 0.692
J056_002343
UBA domain-containing protein 7.
   
 
 0.687
J056_002385
Lysine-specific demethylase 4B.
    
 0.664
J056_001070
Transcriptional repressor rco-1.
    
 0.650
J056_003381
Protein will die slowly.
    
 0.650
J056_001718
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.627
J056_002350
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.627
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.