STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002561DASH complex subunit duo1. (264 aa)    
Predicted Functional Partners:
J056_004026
DASH complex subunit dad3.
    
 0.939
J056_000853
DASH complex subunit DAM1.
    
 0.919
J056_003556
Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.
   
  0.906
J056_000223
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.892
J056_003576
50S ribosomal protein L4.
   
 
 0.891
J056_002510
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.890
J056_003523
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.877
J056_003483
Uncharacterized protein.
   
   0.874
J056_002392
MRP-L46 domain-containing protein.
   
   0.868
J056_002652
Uncharacterized protein.
   
 
 0.868
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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