STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001869UPF0695 membrane protein C.11/PB8B6.06c. (337 aa)    
Predicted Functional Partners:
J056_002737
Chromo domain-containing protein.
    
 0.862
J056_001747
Chromo domain-containing protein.
    
 0.862
J056_002385
Lysine-specific demethylase 4B.
   
 0.823
J056_001934
DNA damage-binding protein 1.
    
 
 0.715
J056_004549
NAD-dependent histone deacetylase SIR2.
    
 0.714
J056_000141
NAD-dependent histone deacetylase HST3.
    
 0.714
J056_000677
Histone H3; Belongs to the histone H3 family.
   
 0.702
J056_001040
Histone H3; Belongs to the histone H3 family.
   
 0.702
J056_000967
Histone H3-like centromeric protein cnp1.
   
 0.702
J056_001871
Histone H3; Belongs to the histone H3 family.
   
 0.702
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.