STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002372Tyrosine--tRNA ligase. (422 aa)    
Predicted Functional Partners:
J056_001561
tRNA-binding domain-containing protein.
 
 
 0.965
J056_000975
Tyrosine--tRNA ligase.
    
 0.945
J056_000517
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.909
J056_000670
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
      0.899
J056_001985
Putative glycine--tRNA ligase.
  
  
 0.811
J056_004252
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.777
J056_000818
Putative leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.773
J056_003956
Putative proline--tRNA ligase C19C7.06.
  
  
 0.773
J056_001661
Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.764
J056_001152
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.764
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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