STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001781U1 snRNP-associated protein. (333 aa)    
Predicted Functional Partners:
J056_001321
RRM domain-containing protein.
   
 0.997
J056_003311
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
   
 
 0.994
J056_002148
Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.
    
 
 0.986
J056_004329
U2 small nuclear ribonucleoprotein A.
   
 0.976
J056_000755
Nuclear cap-binding protein subunit 2.
    
 
 0.975
J056_001251
U1 small nuclear ribonucleoprotein C-2.
    
 0.974
J056_000350
U4/U6.U5 tri-snRNP-associated protein snu66.
    
 0.956
J056_004182
Transcription elongation regulator 1.
   
  0.952
J056_001586
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.942
J056_004172
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.926
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.