STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001794Smr domain-containing protein. (476 aa)    
Predicted Functional Partners:
J056_001966
NADH dehydrogenase 1 alpha subcomplex subunit 6; Belongs to the complex I LYR family.
   
   0.523
J056_001210
NADH dehydrogenase 1 alpha subcomplex subunit 5.
   
   0.508
J056_003619
Lactobacillus shifted protein.
   
   0.506
J056_003377
NADH dehydrogenase 1 alpha subcomplex subunit 2.
   
   0.499
J056_000389
Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.
   
   0.488
J056_000432
NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
   0.466
J056_000250
NADH dehydrogenase 1 beta subcomplex subunit 9; Belongs to the complex I LYR family.
    
   0.459
J056_002354
Uncharacterized protein.
    
   0.453
J056_001565
Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.
    
   0.453
J056_000861
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.
    
   0.453
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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