J056_001812 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_001812

26S protease regulatory subunit 7-like protein; Belongs to the AAA ATPase family. (493 aa)

Predicted Functional Partners:

J056_003189

0.999

J056_003194

0.999

J056_002785

0.999

J056_000651

0.999

J056_000716

0.999

J056_004819

0.999

J056_004852

0.999

J056_004528

0.999

J056_004570

0.999

J056_004588

0.999

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000651	J056_000716	R9AE59	R9AEC0	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	0.999
J056_000651	J056_001812	R9AE59	R9ABP0	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 7-like protein; Belongs to the AAA ATPase family.	0.999
J056_000651	J056_002785	R9AE59	R9A9P8	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Proteasome subunit alpha type.	0.996
J056_000651	J056_003189	R9AE59	R9A9G8	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
J056_000651	J056_003194	R9AE59	R9A9H3	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
J056_000651	J056_004528	R9AE59	R9AGB0	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.998
J056_000651	J056_004570	R9AE59	R9AGB1	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Proteasome subunit beta type-7.	0.990
J056_000651	J056_004588	R9AE59	R9AGI0	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome regulatory subunit rpn5.	0.999
J056_000651	J056_004819	R9AE59	R9AFQ4	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Putative 26S proteasome non-ATPase regulatory subunit 3.	0.998
J056_000651	J056_004852	R9AE59	R9AFY6	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit 6.	0.998
J056_000716	J056_000651	R9AEC0	R9AE59	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
J056_000716	J056_001812	R9AEC0	R9ABP0	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7-like protein; Belongs to the AAA ATPase family.	0.999
J056_000716	J056_002785	R9AEC0	R9A9P8	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	Proteasome subunit alpha type.	0.998
J056_000716	J056_003189	R9AEC0	R9A9G8	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
J056_000716	J056_003194	R9AEC0	R9A9H3	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
J056_000716	J056_004528	R9AEC0	R9AGB0	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
J056_000716	J056_004570	R9AEC0	R9AGB1	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	Proteasome subunit beta type-7.	0.997
J056_000716	J056_004588	R9AEC0	R9AGI0	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn5.	0.999
J056_000716	J056_004819	R9AEC0	R9AFQ4	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	Putative 26S proteasome non-ATPase regulatory subunit 3.	0.998
J056_000716	J056_004852	R9AEC0	R9AFY6	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 6.	0.999