STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001657Vacuolar protein sorting-associated protein 8. (1011 aa)    
Predicted Functional Partners:
J056_004408
Vacuolar protein sorting-associated protein 18-like protein.
    
 
 0.994
J056_003119
Vacuolar protein sorting-associated protein 11-like protein.
    
 
 0.994
J056_003587
Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.
    
 
 0.994
J056_002591
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.985
J056_001125
Vam6/Vps39-like protein.
   
 
 0.981
J056_004204
Transforming growth factor-beta receptor-associated protein 1-like protein.
   
 
 0.981
J056_001502
Vacuolar protein sorting-associated protein 41-like protein.
   
 
 0.685
J056_003049
Ras-related protein Rab-5C.
    
 
 0.647
J056_001509
Ras-related protein Rab-5A.
    
 
 0.636
J056_000201
Ras-related protein Rab-5B.
    
 
 0.636
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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