STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001509Ras-related protein Rab-5A. (204 aa)    
Predicted Functional Partners:
J056_002145
Phosphatidylinositol 3-kinase vps34; Belongs to the PI3/PI4-kinase family.
    
 0.954
J056_003049
Ras-related protein Rab-5C.
  
  
 
0.904
J056_003928
Rabenosyn-5.
   
 0.816
J056_002325
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.731
J056_003033
Putative vacuolar protein sorting-associated protein C2G11.03c; Belongs to the STXBP/unc-18/SEC1 family.
 
  
 0.670
J056_004433
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.666
J056_001657
Vacuolar protein sorting-associated protein 8.
    
 
 0.636
J056_000658
Rab proteins geranylgeranyltransferase component A.
   
 0.636
J056_002596
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.628
J056_001125
Vam6/Vps39-like protein.
   
 
 0.576
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.