STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001458NEDD8-activating enzyme E1 catalytic subunit. (421 aa)    
Predicted Functional Partners:
J056_004430
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.
   
 0.999
J056_004619
Ubiquitin-like protein 1.
   
 0.997
J056_002858
NEDD8-conjugating enzyme UBC12; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.981
J056_004477
Ubiquitin fusion degradation protein 4.
    
 0.981
J056_000640
Ubiquitin-activating enzyme E1 1.
    
0.977
J056_000975
Tyrosine--tRNA ligase.
      0.899
J056_004250
RING-box protein 1.
   
 0.858
J056_000769
Ubiquitin-conjugating enzyme E2 G1.
  
 0.825
J056_003503
Ubiquitin carboxyl-terminal hydrolase.
   
 0.813
J056_003419
Cullin-3; Belongs to the cullin family.
   
 0.804
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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