STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001473Uncharacterized protein. (182 aa)    
Predicted Functional Partners:
J056_004124
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
   
 
 0.890
J056_001553
U3 small nucleolar RNA-associated protein 7.
   
   0.886
J056_000433
Bystin.
   
   0.870
J056_001673
rRNA 2'-O-methyltransferase fibrillarin 2.
   
   0.863
J056_002562
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.850
J056_004305
Suppressor of glycerol defect protein 1.
   
   0.846
J056_002031
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
   0.838
J056_000116
Protein mak16.
   
   0.678
J056_002938
Ribosomal RNA-processing protein 14.
   
 
 0.619
J056_001623
ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.
   
 
 0.600
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.