STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001441RNase H domain-containing protein. (303 aa)    
Predicted Functional Partners:
J056_003022
60S ribosomal protein L21-A.
   
   0.720
J056_001471
Ribosomal_L2_C domain-containing protein.
   
 
 0.660
J056_000682
60S ribosomal protein L8.
   
 
 0.660
J056_003042
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
   
   0.660
J056_000013
LYR motif-containing protein 4; Belongs to the complex I LYR family.
    
 
 0.649
J056_002278
Ankyrin repeat protein nuc-2.
    
 0.643
J056_001002
60S ribosomal protein L39.
   
   0.626
J056_000414
Ubiquitin-40S ribosomal protein S27a.
    
  0.601
J056_002510
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
   0.580
J056_003634
26S proteasome non-ATPase regulatory subunit 14.
    
 0.574
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.