STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001083KH domain-containing protein. (1250 aa)    
Predicted Functional Partners:
J056_003652
Guanine nucleotide-binding protein subunit beta-like protein.
   
 
 0.677
J056_002442
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.591
J056_004655
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
   
 
 0.539
J056_000113
J domain-containing protein.
   
   0.519
J056_001857
Elongation factor 1-gamma.
   
   0.508
J056_001858
Elongation factor 1-gamma; Belongs to the GST superfamily.
   
   0.508
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
      
 0.465
J056_002027
mRNA export factor elf1.
   
   0.460
J056_003031
DNA damage tolerance protein RHC31.
    
 
 0.439
J056_000047
Protein transport protein SEC61 subunit alpha.
   
    0.436
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.