STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001056BTB domain-containing protein. (904 aa)    
Predicted Functional Partners:
J056_004304
Transcription initiation factor IIB.
   
 0.961
J056_002845
Transcription initiation factor TFIID subunit 6.
   
 0.958
J056_003831
Transcription factor IIIB 60 kDa subunit.
   
 0.958
J056_000354
Putative transcription initiation factor TFIID kDa subunit.
    
 0.958
J056_002557
Transcription initiation factor TFIID subunit 4.
    
 0.957
J056_001459
Transcription initiation factor TFIID subunit 2.
    
 0.957
J056_003647
Transcription initiation factor TFIID subunit 12.
    
 0.957
J056_001574
Transcription initiation factor TFIID subunit 7.
    
 0.956
J056_000507
Transcription factor TFIIIB component B.
    
 0.956
J056_004299
Transcription initiation factor TFIID subunit 10.
    
 0.956
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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