STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001153Pseudouridylate synthase 7-like protein. (660 aa)    
Predicted Functional Partners:
J056_001357
Ribosomal_L18e/L15P domain-containing protein.
   
   0.892
J056_002510
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
   0.883
J056_001488
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.882
J056_003077
G domain-containing protein.
   
   0.882
J056_002128
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
   0.874
J056_003073
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
   0.874
J056_001587
L51_S25_CI-B8 domain-containing protein.
   
   0.873
J056_000223
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
   0.873
J056_001800
Putative GTP-binding protein EngB.
    
   0.871
J056_001487
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.871
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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