STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001116Imitation switch two complex protein 1. (935 aa)    
Predicted Functional Partners:
J056_002790
ISWI chromatin-remodeling complex ATPase ISW2.
    
 0.993
J056_000633
DNA polymerase epsilon subunit 3.
    
 
 0.949
J056_004295
Lymphoid-specific helicase.
    
 0.926
J056_001050
Splicing factor 3B subunit 1.
   
 0.738
J056_004178
DNA polymerase V.
    
 0.717
J056_001160
Chromodomain helicase hrp3.
   
 0.671
J056_002208
DNA-directed RNA polymerase I subunit rpa49.
    
 0.640
J056_004594
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
     
 0.631
J056_001164
ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family.
   
 
 0.623
J056_003679
ATP-dependent RNA helicase DBP2-A.
   
 
 0.623
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.