STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000821Ubiquitin conjugation factor E4. (1647 aa)    
Predicted Functional Partners:
J056_004477
Ubiquitin fusion degradation protein 4.
   
 0.986
J056_001131
UV excision repair protein rhp23.
   
 0.982
J056_004612
Ubiquitin fusion degradation protein 1.
    
 
 0.979
J056_000694
Cell division control protein 48; Belongs to the AAA ATPase family.
   
 
 0.978
J056_001319
Nuclear protein localization protein 4.
    
 
 0.974
J056_004633
Ubiquitin thioesterase OTU1.
    
 
 0.971
J056_002777
Deubiquitination-protection protein dph1.
   
 0.958
J056_001114
UBX domain-containing protein 3.
    
 
 0.951
J056_000699
ATPase family 2 protein.
   
 
 0.892
J056_003621
UBX domain-containing protein 3.
   
 
 0.869
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.