STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000818Putative leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family. (1092 aa)    
Predicted Functional Partners:
J056_001152
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.984
J056_000842
Putative glutamate--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.976
J056_000030
Phenylalanine--tRNA ligase beta subunit.
  
  
 0.969
J056_004435
Putative methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.956
J056_002626
Putative glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.947
J056_001561
tRNA-binding domain-containing protein.
  
 0.942
J056_003956
Putative proline--tRNA ligase C19C7.06.
  
 0.939
J056_004252
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.924
J056_000569
Lysine--tRNA ligase.
  
 0.916
J056_001661
Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.910
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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