STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000942DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1259 aa)    
Predicted Functional Partners:
J056_001332
Exosome complex component csl4.
   
 0.962
J056_001127
Exosome complex component rrp45.
   
 0.960
J056_002516
Exosome complex component RRP43.
   
 0.959
J056_003728
Exosome complex component rrp40.
   
 0.958
J056_000194
Exosome complex component rrp4.
   
 0.957
J056_003868
Exosome complex component MTR3.
   
 0.943
J056_000215
HBS1-like protein.
   
 0.933
J056_001629
RNase_PH domain-containing protein.
   
 0.921
J056_001141
Exosome complex component RRP46.
   
 0.891
J056_003791
ATP-dependent RNA helicase mtr4.
   
 0.883
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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