STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000908Uncharacterized protein. (209 aa)    
Predicted Functional Partners:
J056_000414
Ubiquitin-40S ribosomal protein S27a.
    
 0.780
J056_004477
Ubiquitin fusion degradation protein 4.
   
 
 0.731
J056_004250
RING-box protein 1.
    
 0.660
J056_003207
Polyubiquitin-A.
    
 0.629
J056_003742
Ubiquitin-like domain-containing protein.
    
 0.629
J056_004613
Ubiquitin-60S ribosomal protein L40.
    
  0.626
J056_003007
Uncharacterized protein.
    
  0.626
J056_001458
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.591
J056_004619
Ubiquitin-like protein 1.
    
 0.575
J056_000835
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
  0.506
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.