STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000735E3 ubiquitin-protein ligase listerin. (1641 aa)    
Predicted Functional Partners:
J056_004477
Ubiquitin fusion degradation protein 4.
   
 
 0.972
J056_004062
Transcription factor 25.
   
 
 0.701
J056_003409
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
   0.649
J056_001674
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.637
J056_002983
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.611
J056_001619
LIM domain and RING finger protein.
    
 
 0.591
J056_000668
L-serine dehydratase.
    
 
 0.587
J056_001426
60S ribosomal protein L9-A.
   
   0.579
J056_002427
General negative regulator of transcription subunit 4.
    
 
 0.570
J056_000682
60S ribosomal protein L8.
    
   0.559
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.