STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000755Nuclear cap-binding protein subunit 2. (181 aa)    
Predicted Functional Partners:
J056_004778
Nuclear cap-binding protein subunit 1.
   
 0.999
J056_001586
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
J056_003311
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
    
 0.996
J056_000331
Small nuclear ribonucleoprotein G.
   
 0.996
J056_000359
Putative small nuclear ribonucleoprotein F.
   
  0.995
J056_004172
Small nuclear ribonucleoprotein Sm D2.
   
 0.992
J056_002810
Zinc finger protein.
    
 0.990
J056_001321
RRM domain-containing protein.
   
 
 0.990
J056_004123
mRNA export factor mex67.
   
 0.990
J056_001569
Pre-mRNA-splicing factor RSE1.
    
 0.989
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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