STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000438Nucleolar and coiled-body phosphoprotein 1. (407 aa)    
Predicted Functional Partners:
J056_003612
Nucleolar protein 58.
   
 
 0.954
J056_000564
Nucleolar protein 56.
   
 
 0.952
J056_003932
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.929
J056_001673
rRNA 2'-O-methyltransferase fibrillarin 2.
   
 
 0.921
J056_000135
Ribosomal L1 domain-containing protein 1.
   
 
 0.883
J056_002097
Putative ribosomal RNA methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.818
J056_002532
Protein LTV1.
   
    0.781
J056_002367
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.765
J056_000329
Uncharacterized protein.
   
  
 0.748
J056_001641
Brix domain-containing protein C1B9.03c.
   
   0.747
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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