STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000517tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (541 aa)    
Predicted Functional Partners:
J056_001561
tRNA-binding domain-containing protein.
 
  
 
 0.960
J056_004435
Putative methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
0.929
J056_003695
Methionyl-tRNA formyltransferase.
     
 0.925
J056_001207
Cystathionine gamma-lyase.
   
 
 0.910
J056_002372
Tyrosine--tRNA ligase.
 
 
 0.909
J056_001396
Putative 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.
     
 0.905
J056_000818
Putative leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.904
J056_003526
N-acetyltransferase 9.
 
      0.899
J056_003956
Putative proline--tRNA ligase C19C7.06.
  
 0.858
J056_000569
Lysine--tRNA ligase.
   
 0.834
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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