STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004660Uncharacterized protein. (746 aa)    
Predicted Functional Partners:
J056_004765
Protein transport protein SEC23.
   
 0.917
J056_003607
Protein transport protein SEC24.
   
 0.854
J056_001188
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
   
 0.853
J056_002973
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 0.848
J056_003877
Protein transport protein SEC31.
   
 0.778
J056_000954
Small COPII coat GTPase SAR1.
   
 
 0.675
J056_004585
Integral membrane protein sed5; Belongs to the syntaxin family.
    
 0.664
J056_003733
General vesicular transport factor.
   
 
 0.649
J056_002984
Golgi family reassembly-stacking protein 2.
   
 0.642
J056_002563
Protein transport protein SEC22; Belongs to the synaptobrevin family.
   
 
 0.631
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.