STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004834Protein-like protein. (500 aa)    
Predicted Functional Partners:
J056_000660
Vacuolar protein sorting-associated protein 28; Belongs to the VPS28 family.
   
 0.999
J056_000103
Vacuolar protein sorting-associated protein 27.
    
 0.990
J056_003207
Polyubiquitin-A.
    
 0.984
J056_000414
Ubiquitin-40S ribosomal protein S27a.
    
 0.983
J056_004554
Class E vacuolar protein-sorting machinery protein HSE1.
   
 0.913
J056_003203
pH-response regulator protein palA/RIM20.
   
 0.890
J056_004613
Ubiquitin-60S ribosomal protein L40.
    
 0.888
J056_003007
Uncharacterized protein.
    
 0.888
J056_004027
Vacuolar protein sorting-associated protein 22-like protein 1.
    
 0.882
J056_003580
Vacuolar protein-sorting-associated protein 25.
   
 0.880
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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