STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004405Uncharacterized protein. (137 aa)    
Predicted Functional Partners:
J056_003529
Uncharacterized protein.
   
 
 0.928
J056_000076
Uncharacterized protein.
   
 
 0.926
J056_003523
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.918
J056_002392
MRP-L46 domain-containing protein.
   
 
 0.917
J056_000301
50S ribosomal protein L19.
   
 
 0.916
J056_003576
50S ribosomal protein L4.
   
 
 0.915
J056_004082
Uncharacterized protein.
   
 
 0.913
J056_001357
Ribosomal_L18e/L15P domain-containing protein.
   
   0.909
J056_000171
Uncharacterized protein.
   
 
 0.900
J056_001587
L51_S25_CI-B8 domain-containing protein.
   
   0.897
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.