STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004520Signal recognition particle 9 kDa protein. (126 aa)    
Predicted Functional Partners:
J056_000530
Signal recognition particle subunit srp68.
   
 0.999
J056_000476
Uncharacterized protein.
   
 0.999
J056_003439
Signal recognition particle 72 kDa protein-like protein.
    
 0.999
J056_003070
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
 0.999
J056_002239
Signal recognition particle sec65 subunit.
   
 0.999
J056_000174
60S ribosomal protein L34-B.
   
 
 0.892
J056_000028
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.869
J056_002665
60S ribosomal protein L4-B.
    
   0.867
J056_000682
60S ribosomal protein L8.
    
   0.867
J056_000796
60S ribosomal protein L5-A.
    
   0.867
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.