STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002426VMS1-like protein. (652 aa)    
Predicted Functional Partners:
J056_000694
Cell division control protein 48; Belongs to the AAA ATPase family.
   
 
 0.850
J056_000699
ATPase family 2 protein.
   
 
 0.756
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.676
J056_000821
Ubiquitin conjugation factor E4.
    
 
 0.595
J056_004062
Transcription factor 25.
   
 
 0.587
J056_004612
Ubiquitin fusion degradation protein 1.
      
 0.567
J056_001319
Nuclear protein localization protein 4.
    
 
 0.542
J056_000735
E3 ubiquitin-protein ligase listerin.
    
 
 0.500
J056_004481
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.465
J056_000935
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.449
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.