STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004531Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family. (176 aa)    
Predicted Functional Partners:
J056_000769
Ubiquitin-conjugating enzyme E2 G1.
  
 
0.965
J056_003660
E3 ubiquitin-protein ligase synoviolin.
    
 
 0.962
J056_000640
Ubiquitin-activating enzyme E1 1.
    
 0.954
J056_000632
ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.
    
 
 0.952
J056_002747
Uncharacterized protein.
    
   0.948
J056_003207
Polyubiquitin-A.
    
 0.851
J056_002020
ERAD-associated E3 ubiquitin-protein ligase doa10.
    
 
 0.814
J056_003870
Ubiquitin-conjugating enzyme E2 6.
    
0.793
J056_003848
Ubiquitin-conjugating enzyme E2 6.
    
 0.793
J056_003621
UBX domain-containing protein 3.
   
 
 0.775
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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