STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004604Pseudouridine-5'-monophosphatase. (248 aa)    
Predicted Functional Partners:
J056_000239
Riboflavin kinase.
 
    
 0.909
J056_003395
Fe2OG dioxygenase domain-containing protein.
  
 
 0.785
J056_002221
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.693
J056_001886
ATP phosphoribosyltransferase.
    
 0.640
J056_000977
Histidine biosynthesis trifunctional protein.
    
 0.634
J056_004032
N-acetylserotonin O-methyltransferase-like protein.
      
 0.621
J056_000581
Galactose-1-phosphate uridylyltransferase.
    
 0.590
J056_001253
Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
  
 
  0.561
J056_003741
Glucosamine--fructose-6-phosphate aminotransferase.
    
 0.553
J056_001554
Phosphoacetylglucosamine mutase.
    
 0.532
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.