J056_004596 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_004596

Transcription initiation factor IIF subunit beta. (314 aa)

Predicted Functional Partners:

J056_004310

0.999

J056_001575

0.997

J056_001306

0.997

J056_004304

0.997

J056_003135

0.997

J056_003758

0.996

J056_002263

0.992

J056_003183

0.991

J056_004575

0.987

J056_000874

0.987

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000874	J056_001306	R9AJX4	R9AD30	TATA-box-binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
J056_000874	J056_001575	R9AJX4	R9AC13	TATA-box-binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
J056_000874	J056_002263	R9AJX4	R9AQ49	TATA-box-binding protein.	DNA-directed RNA polymerase II subunit RPB9.	0.967
J056_000874	J056_003135	R9AJX4	R9AND3	TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.978
J056_000874	J056_003183	R9AJX4	R9A981	TATA-box-binding protein.	DNA-directed RNA polymerase II subunit rpb7.	0.972
J056_000874	J056_003758	R9AJX4	R9AIP2	TATA-box-binding protein.	DNA-directed RNA polymerase II subunit RPB3.	0.980
J056_000874	J056_004304	R9AJX4	R9AH41	TATA-box-binding protein.	Transcription initiation factor IIB.	0.999
J056_000874	J056_004310	R9AJX4	R9AH22	TATA-box-binding protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.927
J056_000874	J056_004575	R9AJX4	R9AGB7	TATA-box-binding protein.	DNA-directed RNA polymerase II subunit rpb4.	0.973
J056_000874	J056_004596	R9AJX4	R9AGN5	TATA-box-binding protein.	Transcription initiation factor IIF subunit beta.	0.987
J056_001306	J056_000874	R9AD30	R9AJX4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-box-binding protein.	0.993
J056_001306	J056_001575	R9AD30	R9AC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
J056_001306	J056_002263	R9AD30	R9AQ49	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB9.	0.999
J056_001306	J056_003135	R9AD30	R9AND3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
J056_001306	J056_003183	R9AD30	R9A981	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit rpb7.	0.999
J056_001306	J056_003758	R9AD30	R9AIP2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
J056_001306	J056_004304	R9AD30	R9AH41	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIB.	0.997
J056_001306	J056_004310	R9AD30	R9AH22	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.976
J056_001306	J056_004575	R9AD30	R9AGB7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit rpb4.	0.999
J056_001306	J056_004596	R9AD30	R9AGN5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit beta.	0.997