STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004185Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1031 aa)    
Predicted Functional Partners:
J056_004270
Uncharacterized protein.
 0.999
J056_000145
Lipoyl-binding domain-containing protein.
 
 0.999
J056_001099
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
 
 
 0.997
J056_001853
Dihydrolipoyl dehydrogenase.
  
 
 0.985
J056_004407
Putative low-specificity L-threonine aldolase.
    
 0.972
J056_003154
Low-specificity L-threonine aldolase.
    
 0.972
J056_001378
DASH complex subunit dad4.
  
 0.947
J056_003024
L-pipecolate oxidase.
   
 
 0.941
J056_004556
D-amino-acid oxidase.
   
 
 0.935
J056_002492
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.920
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.