STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003840Putative oxidoreductase C1F5.03c. (398 aa)    
Predicted Functional Partners:
J056_001789
Splicing factor U2AF 23 kDa subunit.
 
      0.630
J056_001378
DASH complex subunit dad4.
  
 0.510
J056_004270
Uncharacterized protein.
  
 0.510
J056_003533
Uncharacterized protein.
  
 0.458
J056_000987
Apoptosis-inducing factor 2.
  
 0.458
J056_002182
Apoptosis-inducing factor-like protein A.
  
 0.458
J056_002114
Glutamine synthetase.
  
 
 0.436
J056_001099
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.414
J056_003522
tRNA-specific 2-thiouridylase MnmA.
   
 
 0.405
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.