STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003844RRM domain-containing protein. (394 aa)    
Predicted Functional Partners:
J056_000755
Nuclear cap-binding protein subunit 2.
    
 0.457
J056_004824
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.457
J056_004778
Nuclear cap-binding protein subunit 1.
    
 0.457
J056_001471
Ribosomal_L2_C domain-containing protein.
   
 
 0.453
J056_002824
YTH domain-containing protein 2.
   
 0.446
J056_001251
U1 small nuclear ribonucleoprotein C-2.
    
 0.439
J056_002031
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
 0.434
J056_002433
Eukaryotic translation initiation factor 2 subunit gamma.
   
 0.422
J056_001708
Ubiquitin-conjugating enzyme E2 14.
   
  0.418
J056_004786
Putative ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.418
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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