STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003964Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (974 aa)    
Predicted Functional Partners:
J056_001050
Splicing factor 3B subunit 1.
   
 0.997
J056_003355
F-box-like/WD repeat-containing protein TBL1XR1.
   
 0.997
J056_002469
PHD finger-like domain-containing protein 5B.
    
 0.996
J056_001883
Pre-mRNA-splicing factor sap61.
   
 0.996
J056_001651
Pre-mRNA-splicing factor sap62.
    
 0.995
J056_001569
Pre-mRNA-splicing factor RSE1.
   
 0.994
J056_004329
U2 small nuclear ribonucleoprotein A.
    
 0.994
J056_002148
Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.
   
 0.994
J056_000547
Splicing factor 3B subunit 2.
   
 0.984
J056_004124
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
   
 0.978
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.