STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003986Ubiquitin-like protein 5. (73 aa)    
Predicted Functional Partners:
J056_000350
U4/U6.U5 tri-snRNP-associated protein snu66.
    
 0.993
J056_003593
Pre-mRNA-processing-splicing factor 8.
    
 
 0.986
J056_000309
MFAP1 domain-containing protein.
    
 0.956
J056_001399
Pre-mRNA-splicing factor 38A.
    
 0.940
J056_001068
Zinc finger matrin-type protein 2.
    
 0.844
J056_000149
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
   
  0.836
J056_001280
Pre-mRNA-processing factor 17.
    
 0.820
J056_001186
Protein saf1.
    
  0.819
J056_002985
Pre-mRNA-splicing factor prp1.
    
 0.785
J056_000025
PWI domain-containing protein.
    
  0.784
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.