STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004049KDa U5 small nuclear ribonucleoprotein component. (991 aa)    
Predicted Functional Partners:
J056_000450
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.999
J056_003593
Pre-mRNA-processing-splicing factor 8.
   
 0.999
J056_001452
U5 small nuclear ribonucleoprotein kDa helicase.
   
 0.999
J056_002985
Pre-mRNA-splicing factor prp1.
   
 0.999
J056_001413
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28.
   
 0.998
J056_001586
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
J056_002148
Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.
   
 0.997
J056_000359
Putative small nuclear ribonucleoprotein F.
   
 0.997
J056_000149
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.997
J056_001379
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.