STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003575Protein SGT1. (875 aa)    
Predicted Functional Partners:
J056_003593
Pre-mRNA-processing-splicing factor 8.
    
 
 0.752
J056_001452
U5 small nuclear ribonucleoprotein kDa helicase.
   
 
 0.726
J056_004049
KDa U5 small nuclear ribonucleoprotein component.
   
 
 0.484
J056_001792
HIT-type domain-containing protein.
    
 
 0.427
J056_004206
Putative helicase mug81.
   
 
 0.425
J056_004464
Protein SGT1.
      
 0.420
J056_004614
ATP-dependent DNA helicase MER3.
   
 
 0.415
J056_000450
U5 small nuclear ribonucleoprotein 40 kDa protein.
    
   0.412
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.