STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003680Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily. (351 aa)    
Predicted Functional Partners:
J056_001846
Cyclin CCL1; Belongs to the cyclin family.
    
 0.999
J056_002237
RNA polymerase II transcription factor B subunit 3.
 
 
 0.999
J056_004697
General transcription factor IIH subunit 3.
    
 0.998
J056_004780
Transcription initiation factor IIE subunit alpha.
    
 0.995
J056_003261
DNA repair helicase rad15.
    
 0.992
J056_001306
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.991
J056_004304
Transcription initiation factor IIB.
   
 0.985
J056_004598
Suppressor of stem-loop protein 1.
   
 0.979
J056_001891
RNA polymerase II transcription factor B subunit 1.
   
 0.979
J056_000874
TATA-box-binding protein.
   
 0.979
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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