STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003685Translational activator gcn1. (2370 aa)    
Predicted Functional Partners:
J056_002224
Uncharacterized protein.
   
 
 0.986
J056_003316
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.932
J056_003172
GTP-binding protein 1.
   
 
 0.924
J056_004807
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.899
J056_003044
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.894
J056_000655
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.890
J056_004513
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.890
J056_004829
40S ribosomal protein S20.
   
   0.885
J056_000796
60S ribosomal protein L5-A.
   
   0.881
J056_004481
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.881
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.