STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003690Homoserine dehydrogenase. (366 aa)    
Predicted Functional Partners:
J056_004459
Homoserine kinase.
  
 0.999
J056_001182
Threonine synthase.
  
 0.993
J056_003849
Putative aspartokinase.
 
 0.992
J056_003066
Putative aspartate-semialdehyde dehydrogenase.
  
 0.992
J056_004584
Homoserine O-acetyltransferase.
  
 0.986
J056_001396
Putative 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.
   
 
 0.942
J056_001207
Cystathionine gamma-lyase.
 
 
 0.924
J056_004739
Putative cystathionine gamma-synthase.
  
 
 0.924
J056_001986
ACT domain-containing protein.
  
  
 0.913
J056_000104
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.909
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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