J056_003679 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_003679

ATP-dependent RNA helicase DBP2-A. (1597 aa)

Predicted Functional Partners:

J056_002812

0.893

NOP7

0.855

J056_003791

0.823

J056_004657

0.799

J056_000695

0.791

J056_002031

0.778

J056_000271

0.775

J056_001050

0.768

ERB1

0.749

J056_001673

0.745

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	J056_000271	R9AS53	R9AS94	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.999
ERB1	J056_000695	R9AS53	R9AE93	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Putative rRNA-processing protein ebp2.	0.995
ERB1	J056_001673	R9AS53	R9ABJ5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	rRNA 2'-O-methyltransferase fibrillarin 2.	0.859
ERB1	J056_002031	R9AS53	R9AP44	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.	0.559
ERB1	J056_002812	R9AS53	R9AFG9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Protein gar2.	0.599
ERB1	J056_003679	R9AS53	R9AIH6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ATP-dependent RNA helicase DBP2-A.	0.749
ERB1	J056_003791	R9AS53	R9AJ23	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ATP-dependent RNA helicase mtr4.	0.794
ERB1	NOP7	R9AS53	R9AN17	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
J056_000271	ERB1	R9AS94	R9AS53	RNA helicase.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
J056_000271	J056_000695	R9AS94	R9AE93	RNA helicase.	Putative rRNA-processing protein ebp2.	0.980
J056_000271	J056_001050	R9AS94	R9AD96	RNA helicase.	Splicing factor 3B subunit 1.	0.503
J056_000271	J056_001673	R9AS94	R9ABJ5	RNA helicase.	rRNA 2'-O-methyltransferase fibrillarin 2.	0.767
J056_000271	J056_002031	R9AS94	R9AP44	RNA helicase.	ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.	0.522
J056_000271	J056_002812	R9AS94	R9AFG9	RNA helicase.	Protein gar2.	0.565
J056_000271	J056_003679	R9AS94	R9AIH6	RNA helicase.	ATP-dependent RNA helicase DBP2-A.	0.775
J056_000271	J056_003791	R9AS94	R9AJ23	RNA helicase.	ATP-dependent RNA helicase mtr4.	0.830
J056_000271	J056_004657	R9AS94	R9AFF0	RNA helicase.	mRNA export protein mlo3.	0.478
J056_000271	NOP7	R9AS94	R9AN17	RNA helicase.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.997
J056_000695	ERB1	R9AE93	R9AS53	Putative rRNA-processing protein ebp2.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
J056_000695	J056_000271	R9AE93	R9AS94	Putative rRNA-processing protein ebp2.	RNA helicase.	0.980