STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003713Translocation protein SEC62. (289 aa)    
Predicted Functional Partners:
J056_003457
Translocation protein sec63.
   
 0.996
J056_000047
Protein transport protein SEC61 subunit alpha.
   
 
 0.986
J056_002459
Translocation protein sec66.
    
 
 0.985
J056_004530
Translocation protein sec72.
    
 
 0.985
J056_003352
Uncharacterized protein.
    
 
 0.985
J056_001014
Protein transport protein Sec61 subunit beta.
    
 
 0.947
J056_001953
Serine/threonine-protein kinase fray2.
    
 
 0.896
J056_000551
78 kDa glucose-regulated protein-like protein; Belongs to the heat shock protein 70 family.
    
 
 0.587
J056_004086
Calnexin-like protein.
   
 
 0.567
J056_002376
Signal recognition particle receptor subunit alpha.
    
 
 0.532
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.