STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001422Nefa_Nip30_N domain-containing protein. (797 aa)    
Predicted Functional Partners:
J056_002361
Pre-mRNA-splicing factor SYF1.
    
   0.679
J056_002344
Pre-mRNA-splicing factor CEF1.
    
   0.679
J056_003593
Pre-mRNA-processing-splicing factor 8.
    
   0.679
J056_000984
Conserved oligomeric golgi family complex subunit 4.
      
 0.474
J056_002084
RNA-binding protein 8A.
   
   0.465
J056_001719
Pre-mRNA-splicing factor SPF27.
   
   0.460
J056_002031
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
   0.460
J056_001610
Solute carrier family 2, facilitated glucose transporter member 7; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.457
J056_001699
Uncharacterized protein.
    
   0.454
J056_004776
Uncharacterized protein.
    
 
 0.452
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.